4X41 Transferase date Dec 02, 2014
title Crystal Structure Of Protein Arginine Methyltransferase Prmt
authors W.C.Lee, M.C.Ho
compound source
Molecule: Protein Arginine N-Methyltransferase 8
Chain: A, B
Fragment: Unp Residues 52-385
Synonym: Heterogeneous Nuclear Ribonucleoprotein Methyltran Like Protein 4;
Ec: 2.1.1.125
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Prmt8, Hrmt1l3, Hrmt1l4
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
symmetry Space Group: P 2 2 21
R_factor 0.231 R_Free 0.282
crystal
cell
length a length b length c angle alpha angle beta angle gamma
68.159 78.236 203.861 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.50 Å
ligand SAH enzyme Transferase E.C.2.1.1.125 BRENDA
Primary referencePROTEIN ARGININE METHYLTRANSFERASE 8: tetrameric structure and protein substrate specificity., Lee WC, Lin WL, Matsui T, Chen ES, Wei TW, Lin WH, Hu H, Zheng YG, Tsai MD, Ho MC, Biochemistry. 2015 Nov 3. PMID:26529540
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (107 Kb) [Save to disk]
  • Biological Unit Coordinates (4x41.pdb1.gz) 202 Kb
  • LPC: Ligand-Protein Contacts for 4X41
  • CSU: Contacts of Structural Units for 4X41
  • Structure Factors (213 Kb)
  • Retrieve 4X41 in mmCIF format [Save to disk]
  • Re-refined 4x41 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4X41 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4X41
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 4x41 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4x41_B] [4x41] [4x41_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4X41
  • Community annotation for 4X41 at PDBWiki (http://pdbwiki.org)

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