4X4B RADIATION DAMAGE TO THE NUCLEOPROTEIN COMPLEX C.Esp1396I: DOSE (DWD) 2.1 MGy date
authors Bury, C.S., McGeehan, J.E., Garman, E.F.
compound source
symmetry
R_factor
R_Free 0.2616
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.80
ligand MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceRadiation damage to nucleoprotein complexes in macromolecular crystallography., Bury C, Garman EF, Ginn HM, Ravelli RB, Carmichael I, Kneale G, McGeehan JE, J Synchrotron Radiat. 2015 Mar;22(Pt 2):213-24. doi: 10.1107/S1600577514026289., Epub 2015 Jan 30. PMID:25723923
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (168 Kb) [Save to disk]
  • Biological Unit Coordinates (4x4b.pdb1.gz) 162 Kb
  • LPC: Ligand-Protein Contacts for 4X4B
  • CSU: Contacts of Structural Units for 4X4B
  • Structure Factors (368 Kb)
  • Retrieve 4X4B in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4X4B from S2C, [Save to disk]
  • Re-refined 4x4b structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4X4B in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4X4B
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4X4B, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4x4b] [4x4b_F] [4x4b_D] [4x4b_B] [4x4b_A] [4x4b_C] [4x4b_E]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4X4B: [HTH_XRE ] by SMART
    • Other resources with information on 4X4B
  • Community annotation for 4X4B at PDBWiki (http://pdbwiki.org)

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