4X4T Transferase Rna date Dec 03, 2014
title Crystal Structure Of The A.Fulgidus Cca-Adding Enzyme In Com A G70a Arginyl-Trna Minihelix Ending In Ccacca
authors C.D.Kuhn, L.Joshua-Tor
compound source
Molecule: Cca-Adding Enzyme
Chain: A, C, E, F
Synonym: Cca Trna Nucleotidyltransferase,Trna Cca-Pyrophosp Trna Adenylyl-Cytidylyl- Transferase,Trna Nucleotidyltrans Trna-Nt;
Ec: 2.7.7.72
Engineered: Yes
Organism_scientific: Archaeoglobus Fulgidus (Strain Atcc 49 16 Dsm 4304 Jcm 9628 Nbrc 100126);
Organism_taxid: 224325
Strain: Atcc 49558 Vc-16 Dsm 4304 Jcm 9628 Nbrc 100
Gene: Cca, Af_2156
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)Ripl
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet22

Molecule: G70a Trna Minihelix Ending In Ccacca
Chain: B, D
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_taxid: 9606

Molecule: G70a Trna Minihelix Ending In Ccacca
Chain: G
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_taxid: 9606

Molecule: Rna (5'-D(Pcpg)-3')
Chain: H
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_taxid: 9606

Molecule: Rna (5'-D(Pgpg)-3')
Chain: I
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_taxid: 9606
symmetry Space Group: P 1 21 1
R_factor 0.186 R_Free 0.229
crystal
cell
length a length b length c angle alpha angle beta angle gamma
115.422 83.959 135.320 90.00 103.51 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand 5BU, GOL, PEG enzyme Transferase E.C.2.7.7.72 BRENDA
Gene AF
Gene
Ontology
ChainFunctionProcessComponent
F, A, C, E


Primary referenceOn-Enzyme Refolding Permits Small RNA and tRNA Surveillance by the CCA-Adding Enzyme., Kuhn CD, Wilusz JE, Zheng Y, Beal PA, Joshua-Tor L, Cell. 2015 Feb 12;160(4):644-58. doi: 10.1016/j.cell.2015.01.005. Epub 2015 Jan, 29. PMID:25640237
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1033 Kb) [Save to disk]
  • Biological Unit Coordinates (4x4t.pdb1.gz) 1020 Kb
  • LPC: Ligand-Protein Contacts for 4X4T
  • CSU: Contacts of Structural Units for 4X4T
  • Structure Factors (5430 Kb)
  • Retrieve 4X4T in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4X4T from S2C, [Save to disk]
  • View 4X4T in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4X4T
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4X4T, from MSDmotif at EBI
  • Fold representative 4x4t from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4x4t_I] [4x4t_A] [4x4t_F] [4x4t_C] [4x4t_H] [4x4t_D] [4x4t] [4x4t_G] [4x4t_E] [4x4t_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4X4T
  • Community annotation for 4X4T at PDBWiki (http://pdbwiki.org)

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