4X60	Transferase Transferase Inhibitor	date	Dec 06, 2014
title	Crystal Structure Of Prmt5:Mep50 With Epz015666 And Sinefung
authors	P.A.Boriack-Sjodin
compound		source
Molecule: Protein Arginine N-Methyltransferase 5 Chain: A Synonym: 72 Kda Icln-Binding Protein,Histone-Arginine N- Methyltransferase Prmt5,Jak-Binding Protein 1,Shk1 Kinase-B Protein 1 Homolog,Skb1hs; Ec: 2.1.1.-,2.1.1.125 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Prmt5, Hrmt1l5, Ibp72, Jbp1, Skb1 Expression_system: Spodoptera Frugiperda Expression_system_common: Fall Armyworm Expression_system_taxid: 7108 Expression_system_cell_line: Sf9 Expression_system_vector_type: Baculovirus Expression_system_vector: Pdest
Molecule: Methylosome Protein 50 Chain: B Synonym: Mep-50,Androgen Receptor Cofactor P44,Wd Repeat-Co Protein 77,P44mep50; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Wdr77, Mep50, Wd45, Hkmt1069, Nbla10071 Expression_system: Spodoptera Frugiperda Expression_system_common: Fall Armyworm Expression_system_taxid: 7108 Expression_system_cell_line: Sf9 Expression_system_vector_type: Baculovirus Expression_system_vector: Pdest
symmetry	Space Group: I 2 2 2	R_factor 0.202 R_Free 0.254
crystal cell	length a length b length c angle alpha angle beta angle gamma 103.670 137.960 179.010 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.35 Å
ligand	3XV, GOL, SFG	enzyme	Transferase E.C.2.1.1 BRENDA
Gene Ontology	Chain Function Process Component A transcription corepressor ac... protein-arginine omega-N sym... B ligand-dependent nuclear rec...
Primary reference	A selective inhibitor of PRMT5 with in vivo and in vitro potency in MCL models., Chan-Penebre E, Kuplast KG, Majer CR, Boriack-Sjodin PA, Wigle TJ, Johnston LD, Rioux N, Munchhof MJ, Jin L, Jacques SL, West KA, Lingaraj T, Stickland K, Ribich SA, Raimondi A, Scott MP, Waters NJ, Pollock RM, Smith JJ, Barbash O, Pappalardi M, Ho TF, Nurse K, Oza KP, Gallagher KT, Kruger R, Moyer MP, Copeland RA, Chesworth R, Duncan KW, Nat Chem Biol. 2015 Apr 27. doi: 10.1038/nchembio.1810. PMID:25915199

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (162 Kb) [Save to disk] Biological Unit Coordinates (4x60.pdb1.gz) 156 Kb LPC: Ligand-Protein Contacts for 4X60 CSU: Contacts of Structural Units for 4X60 Structure Factors (977 Kb) Retrieve 4X60 in mmCIF format [Save to disk] Re-refined 4x60 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4X60 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4X60

Cartoon representation from PDB Cartoon Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute Crystal Contacts, from CryCo at Weizmann Institute 3D motif for 4X60, from MSDmotif at EBI Fold representative 4x60 from FSSP and Dali (Families of Structurally Similar Proteins)

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4x60_B] [4x60_A] [4x60] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 4X60: [WD40 ] by SMART

Other resources with information on 4X60

Community annotation for 4X60 at PDBWiki (http://pdbwiki.org)

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