4X60 Transferase Transferase Inhibitor date Dec 06, 2014
title Crystal Structure Of Prmt5:Mep50 With Epz015666 And Sinefung
authors P.A.Boriack-Sjodin
compound source
Molecule: Protein Arginine N-Methyltransferase 5
Chain: A
Synonym: 72 Kda Icln-Binding Protein,Histone-Arginine N- Methyltransferase Prmt5,Jak-Binding Protein 1,Shk1 Kinase-B Protein 1 Homolog,Skb1hs;
Ec: 2.1.1.-,2.1.1.125
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Prmt5, Hrmt1l5, Ibp72, Jbp1, Skb1
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_cell_line: Sf9
Expression_system_vector_type: Baculovirus
Expression_system_vector: Pdest

Molecule: Methylosome Protein 50
Chain: B
Synonym: Mep-50,Androgen Receptor Cofactor P44,Wd Repeat-Co Protein 77,P44mep50;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Wdr77, Mep50, Wd45, Hkmt1069, Nbla10071
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_cell_line: Sf9
Expression_system_vector_type: Baculovirus
Expression_system_vector: Pdest
symmetry Space Group: I 2 2 2
R_factor 0.202 R_Free 0.254
crystal
cell
length a length b length c angle alpha angle beta angle gamma
103.670 137.960 179.010 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.35 Å
ligand 3XV, GOL, SFG enzyme Transferase E.C.2.1.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A
  • transcription corepressor ac...
  • protein-arginine omega-N sym...


  • B
  • ligand-dependent nuclear rec...


  • Primary referenceA selective inhibitor of PRMT5 with in vivo and in vitro potency in MCL models., Chan-Penebre E, Kuplast KG, Majer CR, Boriack-Sjodin PA, Wigle TJ, Johnston LD, Rioux N, Munchhof MJ, Jin L, Jacques SL, West KA, Lingaraj T, Stickland K, Ribich SA, Raimondi A, Scott MP, Waters NJ, Pollock RM, Smith JJ, Barbash O, Pappalardi M, Ho TF, Nurse K, Oza KP, Gallagher KT, Kruger R, Moyer MP, Copeland RA, Chesworth R, Duncan KW, Nat Chem Biol. 2015 Apr 27. doi: 10.1038/nchembio.1810. PMID:25915199
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (162 Kb) [Save to disk]
  • Biological Unit Coordinates (4x60.pdb1.gz) 156 Kb
  • LPC: Ligand-Protein Contacts for 4X60
  • CSU: Contacts of Structural Units for 4X60
  • Structure Factors (977 Kb)
  • Retrieve 4X60 in mmCIF format [Save to disk]
  • Re-refined 4x60 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4X60 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4X60
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4X60, from MSDmotif at EBI
  • Fold representative 4x60 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4x60_B] [4x60_A] [4x60]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4X60: [WD40 ] by SMART
  • Other resources with information on 4X60
  • Community annotation for 4X60 at PDBWiki (http://pdbwiki.org)

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