4X64 Crystal Structure of 30S ribosomal subunit from Thermus thermophilus date
authors Demirci, H., Chen, J., Choi, J., Soltis, M., Puglisi, J.D.
compound source
symmetry
R_factor
R_Free 0.2049
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.35
ligand 0TD, 12A, 2MG, 4OC, 5MC, 6MD, 70U, 7MG, K, M2G, MA6, MG, PAR, PSU, UR3, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
B


C


D


E


F


G


H


I


J


K


L


M


N


O


P


Q


R


S


T


U


Primary referenceN-methyladenosine in mRNA disrupts tRNA selection and translation-elongation dynamics., Choi J, Ieong KW, Demirci H, Chen J, Petrov A, Prabhakar A, O'Leary SE, Dominissini D, Rechavi G, Soltis SM, Ehrenberg M, Puglisi JD, Nat Struct Mol Biol. 2016 Jan 11. doi: 10.1038/nsmb.3148. PMID:26751643
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (2273 Kb) [Save to disk]
  • Biological Unit Coordinates (4x64.pdb1.gz) 2230 Kb
  • LPC: Ligand-Protein Contacts for 4X64
  • CSU: Contacts of Structural Units for 4X64
  • Structure Factors (2991 Kb)
  • Retrieve 4X64 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4X64 from S2C, [Save to disk]
  • Re-refined 4x64 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4X64 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4X64
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4x64_R] [4x64_E] [4x64] [4x64_T] [4x64_G] [4x64_K] [4x64_M] [4x64_N] [4x64_C] [4x64_Q] [4x64_H] [4x64_L] [4x64_U] [4x64_F] [4x64_a] [4x64_D] [4x64_S] [4x64_b] [4x64_J] [4x64_B] [4x64_I] [4x64_A] [4x64_O] [4x64_P]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4X64: [KH] [Ribosomal_S10] [Ribosomal_S15] [Ribosomal_S4] [S4 ] by SMART
    • Other resources with information on 4X64
  • Community annotation for 4X64 at PDBWiki (http://pdbwiki.org)

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