4X6A	Crystal structure of yeast RNA polymerase II encountering oxidative Cyclopurine DNA lesions	date
authors	Wang, L., Chong, J., Wang, D.
compound		source
symmetry		R_factor R_Free 0.2964
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution	3.96
ligand	02I, ZN	enzyme
Gene Ontology	Chain Function Process Component A RNA-directed 5'-3' RNA polym... B RNA-directed 5'-3' RNA polym... C RNA-directed 5'-3' RNA polym... E RNA-directed 5'-3' RNA polym... F RNA-directed 5'-3' RNA polym... H RNA-directed 5'-3' RNA polym... I RNA-directed 5'-3' RNA polym... J RNA-directed 5'-3' RNA polym... DNA-directed RNA polymerase ... K RNA-directed 5'-3' RNA polym... L RNA-directed 5'-3' RNA polym...
Primary reference	Mechanism of RNA polymerase II bypass of oxidative cyclopurine DNA lesions., Walmacq C, Wang L, Chong J, Scibelli K, Lubkowska L, Gnatt A, Brooks PJ, Wang D, Kashlev M, Proc Natl Acad Sci U S A. 2015 Feb 3;112(5):E410-9. doi: 10.1073/pnas.1415186112., Epub 2015 Jan 20. PMID:25605892

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (599 Kb) [Save to disk] Biological Unit Coordinates (4x6a.pdb1.gz) 588 Kb LPC: Ligand-Protein Contacts for 4X6A CSU: Contacts of Structural Units for 4X6A Structure Factors (779 Kb) Retrieve 4X6A in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4X6A from S2C, [Save to disk] Re-refined 4x6a structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4X6A in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4X6A

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 4X6A, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4x6a_I] [4x6a_E] [4x6a_R] [4x6a_L] [4x6a_A] [4x6a_C] [4x6a] [4x6a_T] [4x6a_K] [4x6a_J] [4x6a_H] [4x6a_F] [4x6a_B] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 4X6A: [RNA_pol_Rpb6] [RPOL8c] [RPOL9] [RPOLA_N] [RPOLCX] [RPOLD] [ZnF_C2C2 ] by SMART

Other resources with information on 4X6A

Community annotation for 4X6A at PDBWiki (http://pdbwiki.org)

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