4X6D CD1a ternary complex with endogenous lipids and BK6 TCR date
authors Birkinshaw, R.W., Rossjohn, J.
compound source
symmetry
R_factor
R_Free 0.229
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.98
ligand FUC, NAG, OLA, PAM enzyme
Gene
Ontology
ChainFunctionProcessComponent
D, B
  • cellular response to iron io...

    • Primary referencealphabeta T cell antigen receptor recognition of CD1a presenting self lipid ligands., Birkinshaw RW, Pellicci DG, Cheng TY, Keller AN, Sandoval-Romero M, Gras S, de Jong A, Uldrich AP, Moody DB, Godfrey DI, Rossjohn J, Nat Immunol. 2015 Mar;16(3):258-266. doi: 10.1038/ni.3098. Epub 2015 Feb 2. PMID:25642819
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (528 Kb) [Save to disk]
  • Biological Unit Coordinates (4x6d.pdb1.gz) 273 Kb
  • Biological Unit Coordinates (4x6d.pdb2.gz) 253 Kb
  • LPC: Ligand-Protein Contacts for 4X6D
  • CSU: Contacts of Structural Units for 4X6D
  • Structure Factors (2947 Kb)
  • Retrieve 4X6D in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4X6D from S2C, [Save to disk]
  • Re-refined 4x6d structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4X6D in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4X6D
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4X6D, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4x6d_D] [4x6d_C] [4x6d] [4x6d_B] [4x6d_H] [4x6d_F] [4x6d_A] [4x6d_G] [4x6d_E]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4X6D: [IG_like] [IGc1] [IGv ] by SMART
    • Other resources with information on 4X6D
  • Community annotation for 4X6D at PDBWiki (http://pdbwiki.org)

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