4X6X Human soluble epoxide hydrolase in complex with a three substituted cyclopropane derivative date
authors Chiyo, N., Takai, K., Ishii, T.
compound source
symmetry
R_factor
R_Free 0.2217
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.80
ligand S74 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceThree-dimensional rational approach to the discovery of potent substituted cyclopropyl urea soluble epoxide hydrolase inhibitors., Takai K, Chiyo N, Nakajima T, Nariai T, Ishikawa C, Nakatani S, Ikeno A, Yamamoto S, Sone T, Bioorg Med Chem Lett. 2015 Apr 15;25(8):1705-8. doi: 10.1016/j.bmcl.2015.02.076. , Epub 2015 Mar 7. PMID:25800114
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (215 Kb) [Save to disk]
  • Biological Unit Coordinates (4x6x.pdb1.gz) 209 Kb
  • LPC: Ligand-Protein Contacts for 4X6X
  • CSU: Contacts of Structural Units for 4X6X
  • Structure Factors (1239 Kb)
  • Retrieve 4X6X in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4X6X from S2C, [Save to disk]
  • Re-refined 4x6x structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4X6X in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4X6X
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4X6X, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4x6x] [4x6x_A] [4x6x_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4X6X
  • Community annotation for 4X6X at PDBWiki (http://pdbwiki.org)

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