4XC2	Immune System	date	Dec 17, 2014
title	Crystal Structure Of Gabarap In Complex With Kbtbd6 Lir Pept
authors	J.Huber, H.M.Genau, F.Baschieri, V.Doetsch, H.Farhan, V.V.Rogov, C.Behrends, M.Akutsu
compound		source
Molecule: Gaba(A) Receptor-Associated Protein Chain: A, B, C, D Fragment: Unp Residues 3-116 Synonym: Gabarap Protein,Hcg1987397,Isoform Cra_b Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Gabarap, Hcg_1987397 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Kelch Repeat And Btb Domain-Containing Protein 6 Chain: E, F, G, H Fragment: Unp Residues 663-673 Engineered: Yes		Synthetic: Yes Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606
symmetry	Space Group: P 1	R_factor 0.198 R_Free 0.258
crystal cell	length a length b length c angle alpha angle beta angle gamma 38.893 57.353 67.310 65.30 77.34 89.95
method	X-Ray Diffraction	resolution	1.90 Å
Gene	HCG
Gene Ontology	Chain Function Process Component A, D, C, B chemical synaptic transmissi...
Primary reference	CUL3-KBTBD6/KBTBD7 Ubiquitin Ligase Cooperates with GABARAP Proteins to Spatially Restrict TIAM1-RAC1 Signaling., Genau HM, Huber J, Baschieri F, Akutsu M, Dotsch V, Farhan H, Rogov V, Behrends C, Mol Cell. 2015 Feb 11. pii: S1097-2765(14)01018-1. doi:, 10.1016/j.molcel.2014.12.040. PMID:25684205

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (93 Kb) [Save to disk] Biological Unit Coordinates (4xc2.pdb1.gz) 24 Kb Biological Unit Coordinates (4xc2.pdb2.gz) 24 Kb Biological Unit Coordinates (4xc2.pdb3.gz) 24 Kb Biological Unit Coordinates (4xc2.pdb4.gz) 23 Kb CSU: Contacts of Structural Units for 4XC2 Structure Factors (2036 Kb) Retrieve 4XC2 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4XC2 from S2C, [Save to disk] Re-refined 4xc2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4XC2 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4XC2

Cartoon representation from PDB Cartoon Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute Crystal Contacts, from CryCo at Weizmann Institute 3D motif for 4XC2, from MSDmotif at EBI Fold representative 4xc2 from FSSP and Dali (Families of Structurally Similar Proteins)

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4xc2_F] [4xc2_A] [4xc2_D] [4xc2_B] [4xc2_E] [4xc2_H] [4xc2_G] [4xc2] [4xc2_C] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 4XC2

Community annotation for 4XC2 at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014 Bioinformatics Unit Weizmann Institute of Science

---