4XC2 Immune System date Dec 17, 2014
title Crystal Structure Of Gabarap In Complex With Kbtbd6 Lir Pept
authors J.Huber, H.M.Genau, F.Baschieri, V.Doetsch, H.Farhan, V.V.Rogov, C.Behrends, M.Akutsu
compound source
Molecule: Gaba(A) Receptor-Associated Protein
Chain: A, B, C, D
Fragment: Unp Residues 3-116
Synonym: Gabarap Protein,Hcg1987397,Isoform Cra_b
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Gabarap, Hcg_1987397
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Kelch Repeat And Btb Domain-Containing Protein 6
Chain: E, F, G, H
Fragment: Unp Residues 663-673
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 1
R_factor 0.198 R_Free 0.258
crystal
cell
length a length b length c angle alpha angle beta angle gamma
38.893 57.353 67.310 65.30 77.34 89.95
method X-Ray Diffractionresolution 1.90 Å
Gene HCG
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B
  • chemical synaptic transmissi...

  • Primary referenceCUL3-KBTBD6/KBTBD7 Ubiquitin Ligase Cooperates with GABARAP Proteins to Spatially Restrict TIAM1-RAC1 Signaling., Genau HM, Huber J, Baschieri F, Akutsu M, Dotsch V, Farhan H, Rogov V, Behrends C, Mol Cell. 2015 Feb 11. pii: S1097-2765(14)01018-1. doi:, 10.1016/j.molcel.2014.12.040. PMID:25684205
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (93 Kb) [Save to disk]
  • Biological Unit Coordinates (4xc2.pdb1.gz) 24 Kb
  • Biological Unit Coordinates (4xc2.pdb2.gz) 24 Kb
  • Biological Unit Coordinates (4xc2.pdb3.gz) 24 Kb
  • Biological Unit Coordinates (4xc2.pdb4.gz) 23 Kb
  • CSU: Contacts of Structural Units for 4XC2
  • Structure Factors (2036 Kb)
  • Retrieve 4XC2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4XC2 from S2C, [Save to disk]
  • Re-refined 4xc2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4XC2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4XC2
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4XC2, from MSDmotif at EBI
  • Fold representative 4xc2 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4xc2_F] [4xc2_A] [4xc2_D] [4xc2_B] [4xc2_E] [4xc2_H] [4xc2_G] [4xc2] [4xc2_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4XC2
  • Community annotation for 4XC2 at PDBWiki (http://pdbwiki.org)

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