4XCV Oxidoreductase date Dec 18, 2014
title Probable 2-Hydroxyacid Dehydrogenase From Rhizobium Etli Cfn Complex With Nadph
authors K.M.Langner, I.G.Shabalin, K.B.Handing, O.A.Gasiorowska, M.Stead B.S.Hillerich, S.Chowdhury, J.Hammonds, M.D.Zimmerman, N.Al Oba J.Bonanno, R.Seidel, S.C.Almo, W.Minor, New York Structural Gen Research Consortium (Nysgrc)
compound source
Molecule: Nadp-Dependent 2-Hydroxyacid Dehydrogenase
Chain: A
Engineered: Yes
 Organism_scientific: Rhizobium Etli (Strain Cfn 42 Atcc 5
Organism_taxid: 347834
Strain: Cfn 42 Atcc 51251
Gene: Rhe_ch00179
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21 (De3) Ril
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Psgc-His
symmetry Space Group: P 41 21 2
R_factor 0.149 R_Free 0.178
crystal
cell
length a length b length c angle alpha angle beta angle gamma
65.663 65.663 151.458 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.40 Å
ligand CL, NDP, PEG enzyme
Gene RHE
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (121 Kb) [Save to disk]
  • Biological Unit Coordinates (4xcv.pdb1.gz) 226 Kb
  • LPC: Ligand-Protein Contacts for 4XCV
  • CSU: Contacts of Structural Units for 4XCV
  • Structure Factors (1220 Kb)
  • Retrieve 4XCV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4XCV from S2C, [Save to disk]
  • Re-refined 4xcv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4XCV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4XCV
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4XCV, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4xcv_A] [4xcv]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4XCV
  • Community annotation for 4XCV at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science