4XCX METHYLTRANSFERASE DOMAIN OF SMALL RNA 2'-O-METHYLTRANSFERASE date
authors Walker, J.R., Zeng, H., Dong, A., Li, Y., Wernimont, A., Bountra, C., Arrowsmith, C.H., Edwards, A.M., Brown, P.J., Wu, H., SGC, Structural.Genomics.Consortium.
compound source
symmetry
R_factor
R_Free 0.2491
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.84
ligand SAH enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structure of the chemokine receptor CXCR4 in complex with a viral chemokine., Qin L, Kufareva I, Holden LG, Wang C, Zheng Y, Zhao C, Fenalti G, Wu H, Han GW, Cherezov V, Abagyan R, Stevens RC, Handel TM, Science. 2015 Jan 22. pii: 1261064. PMID:25612609
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (79 Kb) [Save to disk]
  • Biological Unit Coordinates (4xcx.pdb1.gz) 73 Kb
  • LPC: Ligand-Protein Contacts for 4XCX
  • CSU: Contacts of Structural Units for 4XCX
  • Structure Factors (359 Kb)
  • Retrieve 4XCX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4XCX from S2C, [Save to disk]
  • Re-refined 4xcx structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4XCX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4XCX
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4XCX, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4xcx_A] [4xcx]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4XCX
  • Community annotation for 4XCX at PDBWiki (http://pdbwiki.org)

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