4XDA date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand ADP, NA, RIB enzyme
Gene VC0395 ; VC395
Gene
Ontology
ChainFunctionProcessComponent
C, B, A, D


Primary referenceCrystal Structure of Apo and Ligand Bound Vibrio cholerae Ribokinase (Vc-RK): Role of Monovalent Cation Induced Activation and Structural Flexibility in Sugar Phosphorylation., Paul R, Patra MD, Sen U, Adv Exp Med Biol. 2015;842:293-307. doi: 10.1007/978-3-319-11280-0_19. PMID:25408351
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (390 Kb) [Save to disk]
  • Biological Unit Coordinates (4xda.pdb1.gz) 192 Kb
  • Biological Unit Coordinates (4xda.pdb2.gz) 193 Kb
  • LPC: Ligand-Protein Contacts for 4XDA
  • CSU: Contacts of Structural Units for 4XDA
  • Structure Factors (6824 Kb)
  • Retrieve 4XDA in mmCIF format [Save to disk]
  • Re-refined 4xda structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4XDA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4xda] [4xda_A] [4xda_B] [4xda_C] [4xda_D]
  • SWISS-PROT database:

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022,2024
    Bioinformatics Unit
    Weizmann Institute of Science