4XEG Structure of the enzyme-product complex resulting from TDG action on a G/hmU mismatch date
authors Pozharski, E., Malik, S.S., Drohat, A.C.
compound source
symmetry
R_factor
R_Free 0.2315
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.72
ligand ACY, EDO, ORP enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThymine DNA glycosylase exhibits negligible affinity for nucleobases that it removes from DNA., Malik SS, Coey CT, Varney KM, Pozharski E, Drohat AC, Nucleic Acids Res. 2015 Sep 10. pii: gkv890. PMID:26358812
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (68 Kb) [Save to disk]
  • Biological Unit Coordinates (4xeg.pdb1.gz) 62 Kb
  • LPC: Ligand-Protein Contacts for 4XEG
  • CSU: Contacts of Structural Units for 4XEG
  • Structure Factors (748 Kb)
  • Retrieve 4XEG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4XEG from S2C, [Save to disk]
  • Re-refined 4xeg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4XEG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4XEG
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4xeg] [4xeg_D] [4xeg_C] [4xeg_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4XEG: [UDG] [UreE_C ] by SMART
    • Other resources with information on 4XEG
  • Community annotation for 4XEG at PDBWiki (http://pdbwiki.org)

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