4XEQ CRYSTAL STRUCTURE OF A TRAP PERIPLASMIC SOLUTE BINDING PROTEIN FROM DESULFOVIBRIO VULGARIS (Deval_0042, TARGET EFI-510114) BOUND TO COPURIFIED (R)-PANTOIC ACID date
authors Vetting, M.W., Obaidi, N.F.Al., Toro, R., Morisco, L.L., Benach, J., Wasserman, S.R., Attonito, J.D., Glenn, A.Scott., Chamala, S., Chowdhury, S., Lafleur, J., Love, J., Seidel, R.D., Whalen, K.L., Gerlt, J.A., Almo, S.C., EFI, Enzyme.Function.Initiative.
compound source
symmetry
R_factor
R_Free 0.1847
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.70
ligand MSE, PAF enzyme
Gene DEVAL
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (395 Kb) [Save to disk]
  • Biological Unit Coordinates (4xeq.pdb1.gz) 100 Kb
  • Biological Unit Coordinates (4xeq.pdb2.gz) 100 Kb
  • Biological Unit Coordinates (4xeq.pdb3.gz) 98 Kb
  • Biological Unit Coordinates (4xeq.pdb4.gz) 99 Kb
  • LPC: Ligand-Protein Contacts for 4XEQ
  • CSU: Contacts of Structural Units for 4XEQ
  • Structure Factors (7790 Kb)
  • Retrieve 4XEQ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4XEQ from S2C, [Save to disk]
  • Re-refined 4xeq structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4XEQ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4XEQ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4XEQ, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4xeq] [4xeq_B] [4xeq_D] [4xeq_C] [4xeq_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4XEQ
  • Community annotation for 4XEQ at PDBWiki (http://pdbwiki.org)

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