4XID	AntpHD with 15bp DNA duplex	date
authors	White, M.A., Zandarashvili, L., Iwahara, J.
compound		source
symmetry		R_factor R_Free 0.2743
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution	2.70
ligand	MPD, NI	enzyme
Gene Ontology	Chain Function Process Component A, D
Primary reference	Entropic Enhancement of Protein-DNA Affinity by Oxygen-to-Sulfur Substitution in DNA Phosphate., Zandarashvili L, Nguyen D, Anderson KM, White MA, Gorenstein DG, Iwahara J, Biophys J. 2015 Sep 1;109(5):1026-37. doi: 10.1016/j.bpj.2015.07.032. PMID:26331260

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (105 Kb) [Save to disk] Biological Unit Coordinates (4xid.pdb1.gz) 49 Kb Biological Unit Coordinates (4xid.pdb2.gz) 48 Kb LPC: Ligand-Protein Contacts for 4XID CSU: Contacts of Structural Units for 4XID Structure Factors (150 Kb) Retrieve 4XID in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4XID from S2C, [Save to disk] Re-refined 4xid structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4XID in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4XID

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4xid_B] [4xid_D] [4xid_A] [4xid] [4xid_C] [4xid_E] [4xid_F] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 4XID: [HOX ] by SMART

Other resources with information on 4XID

Community annotation for 4XID at PDBWiki (http://pdbwiki.org)

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