4XIU Binary complex structure of Klenow fragment of Taq DNA polymerase I707L mutant with DNA containing TTT overhang date
authors Wu, E.Y.
compound source
symmetry
R_factor
R_Free 0.2861
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.50
ligand DOC, MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceA Conservative Isoleucine to Leucine Mutation Causes Major Rearrangements and Cold Sensitivity in KlenTaq1 DNA Polymerase., Wu EY, Walsh AR, Materne EC, Hiltner EP, Zielinski B, Miller BR 3rd, Mawby L, Modeste E, Parish CA, Barnes WM, Kermekchiev MB, Biochemistry. 2015 Jan 9. PMID:25537790
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (100 Kb) [Save to disk]
  • Biological Unit Coordinates (4xiu.pdb1.gz) 95 Kb
  • LPC: Ligand-Protein Contacts for 4XIU
  • CSU: Contacts of Structural Units for 4XIU
  • Structure Factors (398 Kb)
  • Retrieve 4XIU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4XIU from S2C, [Save to disk]
  • Re-refined 4xiu structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4XIU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4XIU
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4XIU, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4xiu_C] [4xiu_B] [4xiu_A] [4xiu]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4XIU: [POLAc ] by SMART
    • Other resources with information on 4XIU
  • Community annotation for 4XIU at PDBWiki (http://pdbwiki.org)

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