OCA Atlas for 4XJK

4XJK

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

CA, MN, NA

enzyme

Gene
Ontology

Chain	Function	Process	Component
C, A, E, G, I
J, F, D, B, H	antioxidant activity

Primary reference

Manganese Binding Properties of Human Calprotectin under Conditions of High and Low Calcium: X-ray Crystallographic and Advanced Electron Paramagnetic Resonance Spectroscopic Analysis., Gagnon DM, Brophy MB, Bowman SE, Stich TA, Drennan CL, Britt RD, Nolan EM, J Am Chem Soc. 2015 Mar 4;137(8):3004-16. doi: 10.1021/ja512204s. Epub 2015 Feb, 18. PMID:25597447

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (188 Kb) [Save to disk]

Biological Unit Coordinates (4xjk.pdb1.gz) 73 Kb

Biological Unit Coordinates (4xjk.pdb2.gz) 75 Kb

Biological Unit Coordinates (4xjk.pdb3.gz) 76 Kb

LPC: Ligand-Protein Contacts for 4XJK

CSU: Contacts of Structural Units for 4XJK

Structure Factors (1610 Kb)

Retrieve 4XJK in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 4XJK from S2C, [Save to disk]

Re-refined 4xjk structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4XJK in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4xjk] [4xjk_A] [4xjk_B] [4xjk_C] [4xjk_D] [4xjk_E] [4xjk_F] [4xjk_G] [4xjk_H] [4xjk_I] [4xjk_J]

SWISS-PROT database:

Domain found in 4XJK: [S_100 ] by SMART

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