4XMM Structure of the yeast coat nucleoporin complex, space group C2 date
authors Stuwe, T., Correia, A.R., Lin, D.H., Paduch, M., Lu, V.T., Kossiakoff, A.A., Hoelz, A.
compound source
symmetry
R_factor
R_Free 0.3527
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 7.38
Gene
Ontology
ChainFunctionProcessComponent
A
  • COPII-coated vesicle budding...

    • B


    C

  • nuclear pore
  • nuclear pore outer ring
    • D


    E


    F


    Primary referenceNuclear pores. Architecture of the nuclear pore complex coat., Stuwe T, Correia AR, Lin DH, Paduch M, Lu VT, Kossiakoff AA, Hoelz A, Science. 2015 Mar 6;347(6226):1148-52. doi: 10.1126/science.aaa4136. Epub 2015, Feb 12. PMID:25745173
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (492 Kb) [Save to disk]
  • Biological Unit Coordinates (4xmm.pdb1.gz) 479 Kb
  • CSU: Contacts of Structural Units for 4XMM
  • Structure Factors (89 Kb)
  • Retrieve 4XMM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4XMM from S2C, [Save to disk]
  • Re-refined 4xmm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4XMM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4XMM
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4XMM, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4xmm_L] [4xmm_C] [4xmm_E] [4xmm_D] [4xmm_H] [4xmm_B] [4xmm_A] [4xmm] [4xmm_F]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4XMM: [IG_like] [IGv] [WD40 ] by SMART
    • Other resources with information on 4XMM
  • Community annotation for 4XMM at PDBWiki (http://pdbwiki.org)

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