4XMP Crystal structure of broadly and potently neutralizing antibody VRC08 in complex with HIV-1 clade A strain Q842.d12 gp120 date
authors Zhou, T., Srivatsan, S., Kwong, P.D.
compound source
symmetry
R_factor
R_Free 0.2012
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.78
ligand BU3, NAG, PCA enzyme
Gene
Ontology
ChainFunctionProcessComponent
G


L


Primary referenceMaturation and Diversity of the VRC01-Antibody Lineage over 15 Years of Chronic HIV-1 Infection., Wu X, Zhang Z, Schramm CA, Joyce MG, Do Kwon Y, Zhou T, Sheng Z, Zhang B, O'Dell S, McKee K, Georgiev IS, Chuang GY, Longo NS, Lynch RM, Saunders KO, Soto C, Srivatsan S, Yang Y, Bailer RT, Louder MK, Mullikin JC, Connors M, Kwong PD, Mascola JR, Shapiro L, Cell. 2015 Apr 8. pii: S0092-8674(15)00257-3. doi: 10.1016/j.cell.2015.03.004. PMID:25865483
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (395 Kb) [Save to disk]
  • Biological Unit Coordinates (4xmp.pdb1.gz) 385 Kb
  • LPC: Ligand-Protein Contacts for 4XMP
  • CSU: Contacts of Structural Units for 4XMP
  • Structure Factors (1346 Kb)
  • Retrieve 4XMP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4XMP from S2C, [Save to disk]
  • Re-refined 4xmp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4XMP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4XMP
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4XMP, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4xmp_H] [4xmp_L] [4xmp_G] [4xmp]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4XMP: [IG_like] [IGv ] by SMART
    • Other resources with information on 4XMP
  • Community annotation for 4XMP at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science