4XNZ Crystal structure of broadly and potently neutralizing antibody VRC06B in complex with HIV-1 clade A/E strain 93TH057 gp120 date
authors Zhou, T., Srivatsan, S., Kwong, P.D.
compound source
symmetry
R_factor
R_Free 0.3011
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.39
ligand FUC, NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, G


F, C, L


Primary referenceMaturation and Diversity of the VRC01-Antibody Lineage over 15 Years of Chronic HIV-1 Infection., Wu X, Zhang Z, Schramm CA, Joyce MG, Do Kwon Y, Zhou T, Sheng Z, Zhang B, O'Dell S, McKee K, Georgiev IS, Chuang GY, Longo NS, Lynch RM, Saunders KO, Soto C, Srivatsan S, Yang Y, Bailer RT, Louder MK, Mullikin JC, Connors M, Kwong PD, Mascola JR, Shapiro L, Cell. 2015 Apr 8. pii: S0092-8674(15)00257-3. doi: 10.1016/j.cell.2015.03.004. PMID:25865483
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (791 Kb) [Save to disk]
  • Biological Unit Coordinates (4xnz.pdb1.gz) 265 Kb
  • Biological Unit Coordinates (4xnz.pdb2.gz) 266 Kb
  • Biological Unit Coordinates (4xnz.pdb3.gz) 263 Kb
  • LPC: Ligand-Protein Contacts for 4XNZ
  • CSU: Contacts of Structural Units for 4XNZ
  • Structure Factors (262 Kb)
  • Retrieve 4XNZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4XNZ from S2C, [Save to disk]
  • Re-refined 4xnz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4XNZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4XNZ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4XNZ, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4xnz_D] [4xnz_A] [4xnz_H] [4xnz_C] [4xnz_F] [4xnz_E] [4xnz_L] [4xnz] [4xnz_G] [4xnz_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4XNZ: [IG_like] [IGv ] by SMART
    • Other resources with information on 4XNZ
  • Community annotation for 4XNZ at PDBWiki (http://pdbwiki.org)

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