OCA Atlas for 4XPJ

4XPJ

Crystal structure of Nerve growth factor in complex with lysophosphatidylinositol

date

authors

Sun, H.L., Jiang, T.

compound

source

symmetry

R_factor

R_Free

0.2658

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

2.60

ligand

LPY

enzyme

Gene
Ontology

Chain	Function	Process	Component
A, B

Primary reference

The structure of nerve growth factor in complex with lysophosphatidylinositol., Sun HL, Jiang T, Acta Crystallogr F Struct Biol Commun. 2015 Jul;71(Pt 7):906-12. doi:, 10.1107/S2053230X15008870. Epub 2015 Jun 27. PMID:26144237

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (79 Kb) [Save to disk]

Biological Unit Coordinates (4xpj.pdb1.gz) 75 Kb

LPC: Ligand-Protein Contacts for 4XPJ

CSU: Contacts of Structural Units for 4XPJ

Structure Factors (136 Kb)

Retrieve 4XPJ in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 4XPJ from S2C, [Save to disk]

Re-refined 4xpj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4XPJ in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4XPJ

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4xpj] [4xpj_A] [4xpj_B]

SWISS-PROT database:

Domain organization of by SWISSPFAM

Domain found in 4XPJ: [NGF ] by SMART

Other resources with information on 4XPJ

Community annotation for 4XPJ at PDBWiki (http://pdbwiki.org)

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