4XRH Human DNA polymerase lambda- MgdTTP binary and complex with 6 paired DNA date
authors Liu, M.S., Tsai, M.D.
compound source
symmetry
R_factor
R_Free 0.2514
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.00
ligand MG, TTP enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural Mechanism for the Fidelity Modulation of DNA Polymerase lambda., Liu MS, Tsai HY, Liu XX, Ho MC, Wu WJ, Tsai MD, J Am Chem Soc. 2016 Feb 24;138(7):2389-98. doi: 10.1021/jacs.5b13368. Epub 2016, Feb 11. PMID:26836966
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (88 Kb) [Save to disk]
  • Biological Unit Coordinates (4xrh.pdb1.gz) 45 Kb
  • Biological Unit Coordinates (4xrh.pdb2.gz) 40 Kb
  • LPC: Ligand-Protein Contacts for 4XRH
  • CSU: Contacts of Structural Units for 4XRH
  • Structure Factors (293 Kb)
  • Retrieve 4XRH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4XRH from S2C, [Save to disk]
  • Re-refined 4xrh structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4XRH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4XRH
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4xrh_T] [4xrh] [4xrh_P] [4xrh_B] [4xrh_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4XRH: [HhH1] [POLXc ] by SMART
    • Other resources with information on 4XRH
  • Community annotation for 4XRH at PDBWiki (http://pdbwiki.org)

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