4XRS Transcription date Jan 21, 2015
title Heterodimeric Complex Of Transcription Factors Meis1 And Dlx Specific Dna
authors A.Jorma, Y.Yin, K.R.Nitta, K.Dave, M.Enge, T.Kivioja, A.Popov, E.Mo J.Taipale
compound source
Molecule: Dna (5'-D(Pcpapaptptpaptpcpcptpgptpc 3');
Chain: M
Engineered: Yes
Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Dna (5'- D(Papcpapaptptpaptpcpcptpgptpcpapapc)-3');
Chain: D
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Dna (5'- D(Pgptptpgpapcpapgpgpaptpapaptptpgptpt)-3
Chain: E
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Dna (5'- D(Ptptpgpapcpapgpgpaptpapaptptpgpt)-3');
Chain: L
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Homeobox Protein Meis1
Chain: A, B
Fragment: Unp Residues 283-340
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Meis1
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_variant: Rosetta
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Petg20a

Molecule: Homeobox Protein Dlx-3
Chain: G, I
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Dlx3
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_variant: Rosetta
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Petg20a
symmetry Space Group: P 21 21 21
R_factor 0.331 R_Free 0.359
crystal
cell
length a length b length c angle alpha angle beta angle gamma
69.636 69.845 116.888 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.50 Å
Gene
Ontology
ChainFunctionProcessComponent
A, B


I, G


Primary referenceDNA-dependent formation of transcription factor pairs alters their binding specificity., Jolma A, Yin Y, Nitta KR, Dave K, Popov A, Taipale M, Enge M, Kivioja T, Morgunova E, Taipale J, Nature. 2015 Nov 19;527(7578):384-8. doi: 10.1038/nature15518. Epub 2015 Nov 9. PMID:26550823
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (71 Kb) [Save to disk]
  • Biological Unit Coordinates (4xrs.pdb1.gz) 33 Kb
  • Biological Unit Coordinates (4xrs.pdb2.gz) 35 Kb
  • CSU: Contacts of Structural Units for 4XRS
  • Structure Factors (163 Kb)
  • Retrieve 4XRS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4XRS from S2C, [Save to disk]
  • Re-refined 4xrs structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4XRS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4XRS
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 4xrs from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4xrs_I] [4xrs_M] [4xrs_D] [4xrs_G] [4xrs_A] [4xrs] [4xrs_L] [4xrs_B] [4xrs_E]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4XRS: [HOX ] by SMART
  • Other resources with information on 4XRS
  • Community annotation for 4XRS at PDBWiki (http://pdbwiki.org)

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