4XW3 Crystal structure of the SPRY domain of the human DEAD-box protein DDX1 date
authors Kellner, J.N., Meinhart, A.
compound source
symmetry
R_factor
R_Free 0.2368
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.00
Gene HCG
Primary referenceStructure of the SPRY domain of the human RNA helicase DDX1, a putative interaction platform within a DEAD-box protein., Kellner JN, Meinhart A, Acta Crystallogr F Struct Biol Commun. 2015 Sep 1;71(Pt 9):1176-88. doi:, 10.1107/S2053230X15013709. Epub 2015 Aug 25. PMID:26323305
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (129 Kb) [Save to disk]
  • Biological Unit Coordinates (4xw3.pdb1.gz) 62 Kb
  • Biological Unit Coordinates (4xw3.pdb2.gz) 63 Kb
  • CSU: Contacts of Structural Units for 4XW3
  • Structure Factors (244 Kb)
  • Retrieve 4XW3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4XW3 from S2C, [Save to disk]
  • Re-refined 4xw3 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4XW3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4XW3
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4xw3] [4xw3_A] [4xw3_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4XW3: [SPRY ] by SMART
    • Other resources with information on 4XW3
  • Community annotation for 4XW3 at PDBWiki (http://pdbwiki.org)

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