4XXO Crystal Structure of Human APOBEC3A date
authors Bohn, M.F., Shandilya, S.M.D., Schiffer, C.A.
compound source
symmetry
R_factor
R_Free 0.2531
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.84
ligand CL, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • cytidine deaminase activity


    • Primary referenceThe ssDNA Mutator APOBEC3A Is Regulated by Cooperative Dimerization., Bohn MF, Shandilya SM, Silvas TV, Nalivaika EA, Kouno T, Kelch BA, Ryder SP, Kurt-Yilmaz N, Somasundaran M, Schiffer CA, Structure. 2015 May 5;23(5):903-11. doi: 10.1016/j.str.2015.03.016. Epub 2015 Apr, 23. PMID:25914058
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (68 Kb) [Save to disk]
  • Biological Unit Coordinates (4xxo.pdb1.gz) 63 Kb
  • LPC: Ligand-Protein Contacts for 4XXO
  • CSU: Contacts of Structural Units for 4XXO
  • Structure Factors (371 Kb)
  • Retrieve 4XXO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4XXO from S2C, [Save to disk]
  • Re-refined 4xxo structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4XXO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4XXO
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4XXO, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4xxo] [4xxo_B] [4xxo_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4XXO
  • Community annotation for 4XXO at PDBWiki (http://pdbwiki.org)

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