4XXS Crystal structure of BACE1 with a pyrazole-substituted tetrahydropyran thioamidine date
authors Parris, K.D., Pandit, J.
compound source
symmetry
R_factor
R_Free 0.2076
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.86
ligand DMS, GOL, IOD, SI5 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceUtilizing CYP2D6 and BACE1 Structure Complexes to Reduce Risk of Drug-Drug Interactions with a Novel Series of Centrally Efficacious BACE1 Inhibitors., Brodney MA, Beck EM, Butler CR, Barreiro G, Johnson EF, Riddell D, Parris K, Nolan CE, Fan Y, Atchison K, Gonzales C, Robshaw A, Doran SD, Bundesmann MW, Buzon LM, Dutra JK, Henegar KE, LaChapelle EA, Hou X, Rogers BN, Pandit J, Lira R, Martinez-Alsina LA, Mikochik P, Murray JC, Ogilvie K, Price L, Sakya S, Yu A, Zhang Y, O'Neill BT, J Med Chem. 2015 Mar 17. PMID:25781223
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (74 Kb) [Save to disk]
  • Biological Unit Coordinates (4xxs.pdb1.gz) 69 Kb
  • LPC: Ligand-Protein Contacts for 4XXS
  • CSU: Contacts of Structural Units for 4XXS
  • Structure Factors (1102 Kb)
  • Retrieve 4XXS in mmCIF format [Save to disk]
  • Re-refined 4xxs structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4XXS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4XXS
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4XXS, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4xxs_A] [4xxs]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4XXS
  • Community annotation for 4XXS at PDBWiki (http://pdbwiki.org)

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