4XY8 Crystal Structure of the bromodomain of BRD9 in complex with a 2-amine-9H-purine ligand date
authors Picaud, S., Delft, F.von., Edwards, A.M., Arrowsmith, C.H., Bountra, C., Filippakopoulos, P., SGC, Structural.Genomics.Consortium.
compound source
symmetry
R_factor
R_Free 0.1857
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.70
ligand 43U, BR enzyme
Primary reference9H-Purine Scaffold Reveals Induced-Fit Pocket Plasticity of the BRD9 Bromodomain., Picaud S, Strocchia M, Terracciano S, Lauro G, Mendez J, Daniels DL, Riccio R, Bifulco G, Bruno I, Filippakopoulos P, J Med Chem. 2015 Mar 5. PMID:25703523
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (47 Kb) [Save to disk]
  • Biological Unit Coordinates (4xy8.pdb1.gz) 41 Kb
  • LPC: Ligand-Protein Contacts for 4XY8
  • CSU: Contacts of Structural Units for 4XY8
  • Structure Factors (273 Kb)
  • Retrieve 4XY8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4XY8 from S2C, [Save to disk]
  • Re-refined 4xy8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4XY8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4XY8
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4XY8, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4xy8] [4xy8_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4XY8: [BROMO ] by SMART
    • Other resources with information on 4XY8
  • Community annotation for 4XY8 at PDBWiki (http://pdbwiki.org)

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