4XYK Crystal structure of human phosphofructokinase-1 in complex with ADP, Northeast Structural Genomics Consortium Target HR9275 date
authors Forouhar, F., Webb, B.A., Szu, F.E., Seetharaman, J., Barber, D.L., Tong, L., NESG, Northeast.Structural.Genomics.Consortium.
compound source
symmetry
R_factor
R_Free 0.290
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.40
ligand ADP, PO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceStructures of human phosphofructokinase-1 and atomic basis of cancer-associated mutations., Webb BA, Forouhar F, Szu FE, Seetharaman J, Tong L, Barber DL, Nature. 2015 May 18. doi: 10.1038/nature14405. PMID:25985179
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (431 Kb) [Save to disk]
  • Biological Unit Coordinates (4xyk.pdb1.gz) 423 Kb
  • LPC: Ligand-Protein Contacts for 4XYK
  • CSU: Contacts of Structural Units for 4XYK
  • Structure Factors (417 Kb)
  • Retrieve 4XYK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4XYK from S2C, [Save to disk]
  • Re-refined 4xyk structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4XYK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4XYK
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4XYK, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4xyk_D] [4xyk] [4xyk_A] [4xyk_C] [4xyk_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4XYK
  • Community annotation for 4XYK at PDBWiki (http://pdbwiki.org)

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