4Y05 Transport Protein date Feb 05, 2015
title Kif2c Short Loop2 Construct
authors W.Wang, M.Knossow, B.Gigant
compound source
Molecule: Kinesin-Like Protein Kif2c
Chain: A
Fragment: Unp Residues 216-599
Synonym: Kinesin-Like Protein 6,Mitotic Centromere-Associat Kinesin,Mcak;
Engineered: Yes
Mutation: Yes
Other_details: The Construct Has A C-Terminal His-Tag.
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Kif2c, Knsl6
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a
symmetry Space Group: P 43 21 2
R_factor 0.192 R_Free 0.204
crystal
cell
length a length b length c angle alpha angle beta angle gamma
83.889 83.889 147.872 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.59 Å
ligand ADP, MG, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceNew insights into the coupling between microtubule depolymerization and ATP hydrolysis by kinesin-13 protein Kif2C., Wang W, Shen T, Guerois R, Zhang F, Kuerban H, Lv Y, Gigant B, Knossow M, Wang C, J Biol Chem. 2015 Jun 8. pii: jbc.M115.646919. PMID:26055718
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (120 Kb) [Save to disk]
  • Biological Unit Coordinates (4y05.pdb1.gz) 114 Kb
  • LPC: Ligand-Protein Contacts for 4Y05
  • CSU: Contacts of Structural Units for 4Y05
  • Structure Factors (166 Kb)
  • Retrieve 4Y05 in mmCIF format [Save to disk]
  • Re-refined 4y05 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4Y05 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4Y05
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4Y05, from MSDmotif at EBI
  • Fold representative 4y05 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4y05] [4y05_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4Y05: [KISc ] by SMART
  • Other resources with information on 4Y05
  • Community annotation for 4Y05 at PDBWiki (http://pdbwiki.org)

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