4Y0Q Bovine beta-lactoglobulin complex with pramocaine crystallized from sodium citrate (BLG-PRM1) date
authors Loch, J.I., Bonarek, P., Polit, A., Jablonski, M., Czub, M., Ye, X., Lewinski, K.
compound source
symmetry
R_factor
R_Free 0.27843
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.00
ligand PX9 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referencebeta-Lactoglobulin interactions with local anaesthetic drugs - Crystallographic and calorimetric studies., Loch JI, Bonarek P, Polit A, Jablonski M, Czub M, Ye X, Lewinski K, Int J Biol Macromol. 2015 Jun 16;80:87-94. doi: 10.1016/j.ijbiomac.2015.06.013. PMID:26092174
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (32 Kb) [Save to disk]
  • Biological Unit Coordinates (4y0q.pdb1.gz) 27 Kb
  • LPC: Ligand-Protein Contacts for 4Y0Q
  • CSU: Contacts of Structural Units for 4Y0Q
  • Structure Factors (233 Kb)
  • Retrieve 4Y0Q in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4Y0Q from S2C, [Save to disk]
  • Re-refined 4y0q structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4Y0Q in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4Y0Q
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4y0q] [4y0q_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4Y0Q
  • Community annotation for 4Y0Q at PDBWiki (http://pdbwiki.org)

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