4Y30 Crystal structure of human protein arginine methyltransferase PRMT6 bound to SAH and EPZ020411 date
authors Swinger, K.K., Boriack-Sjodin, P.A.
compound source
symmetry
R_factor
R_Free 0.2208
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.10
ligand 49L, GOL, MG, SAH enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • histone methyltransferase ac...


    • Primary referenceAryl Pyrazoles as Potent Inhibitors of Arginine Methyltransferases: Identification of the First PRMT6 Tool Compound., Mitchell LH, Drew AE, Ribich SA, Rioux N, Swinger KK, Jacques SL, Lingaraj T, Boriack-Sjodin PA, Waters NJ, Wigle TJ, Moradei O, Jin L, Riera T, Porter-Scott M, Moyer MP, Smith JJ, Chesworth R, Copeland RA, ACS Med Chem Lett. 2015 Apr 6;6(6):655-9. doi: 10.1021/acsmedchemlett.5b00071., eCollection 2015 Jun 11. PMID:26101569
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (130 Kb) [Save to disk]
  • Biological Unit Coordinates (4y30.pdb1.gz) 124 Kb
  • LPC: Ligand-Protein Contacts for 4Y30
  • CSU: Contacts of Structural Units for 4Y30
  • Structure Factors (948 Kb)
  • Retrieve 4Y30 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4Y30 from S2C, [Save to disk]
  • Re-refined 4y30 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4Y30 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4Y30
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4Y30, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4y30_B] [4y30] [4y30_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4Y30
  • Community annotation for 4Y30 at PDBWiki (http://pdbwiki.org)

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