4Y5O Transferase date Feb 11, 2015
title Ccm2 Hhd In Complex With Mekk3 Npb1
authors O.S.Fisher, T.J.Boggon
compound source
Molecule: Malcavernin
Chain: A
Synonym: Cerebral Cavernous Malformations 2 Protein
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ccm2, C7orf22, Pp10187
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Rosetta (De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet32

Molecule: Mitogen-Activated Protein Kinase Kinase Kinase 3
Chain: B
Synonym: Mapkerk Kinase Kinase 3,Mekk 3
Ec: 2.7.11.25
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Map3k3, Mapkkk3, Mekk3
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21 (De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pcdf
symmetry Space Group: P 1 21 1
R_factor 0.208 R_Free 0.232
crystal
cell
length a length b length c angle alpha angle beta angle gamma
43.310 45.349 61.533 90.00 94.95 90.00
method X-Ray Diffractionresolution 2.35 Å
ligand
enzyme Transferase E.C.2.7.11.25 BRENDA
Primary referenceStructure and vascular function of MEKK3-cerebral cavernous malformations 2 complex., Fisher OS, Deng H, Liu D, Zhang Y, Wei R, Deng Y, Zhang F, Louvi A, Turk BE, Boggon TJ, Su B, Nat Commun. 2015 Aug 3;6:7937. doi: 10.1038/ncomms8937. PMID:26235885
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (69 Kb) [Save to disk]
  • Biological Unit Coordinates (4y5o.pdb1.gz) 63 Kb
  • CSU: Contacts of Structural Units for 4Y5O
  • Structure Factors (166 Kb)
  • Retrieve 4Y5O in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4Y5O from S2C, [Save to disk]
  • Re-refined 4y5o structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4Y5O in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4Y5O
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 4y5o from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4y5o] [4y5o_A] [4y5o_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4Y5O: [PB1 ] by SMART
  • Other resources with information on 4Y5O
  • Community annotation for 4Y5O at PDBWiki (http://pdbwiki.org)

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