OCA Atlas for 4Y5X

4Y5X

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

FLC, PEG

enzyme

Gene
Ontology

Chain	Function	Process	Component
F, C, I, L

Primary reference

Tuning Cytokine Receptor Signaling by Re-orienting Dimer Geometry with Surrogate Ligands., Moraga I, Wernig G, Wilmes S, Gryshkova V, Richter CP, Hong WJ, Sinha R, Guo F, Fabionar H, Wehrman TS, Krutzik P, Demharter S, Plo I, Weissman IL, Minary P, Majeti R, Constantinescu SN, Piehler J, Garcia KC, Cell. 2015 Mar 12;160(6):1196-208. doi: 10.1016/j.cell.2015.02.011. Epub 2015 Feb, 26. PMID:25728669

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (276 Kb) [Save to disk]

Biological Unit Coordinates (4y5x.pdb1.gz) 138 Kb

Biological Unit Coordinates (4y5x.pdb2.gz) 135 Kb

LPC: Ligand-Protein Contacts for 4Y5X

CSU: Contacts of Structural Units for 4Y5X

Structure Factors (1125 Kb)

Retrieve 4Y5X in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 4Y5X from S2C, [Save to disk]

Re-refined 4y5x structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4Y5X in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4y5x] [4y5x_A] [4y5x_B] [4y5x_C] [4y5x_D] [4y5x_E] [4y5x_F] [4y5x_G] [4y5x_H] [4y5x_I] [4y5x_J] [4y5x_K] [4y5x_L]

SWISS-PROT database:

Domains found in 4Y5X: [FN3] [IGv ] by SMART

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