OCA Atlas for 4Y5Z

4Y5Z

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

SO4

enzyme

Gene

SAOUHSC

Gene
Ontology

Chain	Function	Process	Component
3, X, T, y, n, 0, u, P, Q, e, 5, H, h, F, G, D, I, M, 6, r, q, C, L, k, t, 4, Y, d, A, w, W, f, j, O, m, s, E, V, 1, Z, K, p, N, o, 2, S, B, v, 7, l, U, c, J, b, a, g, i, z, x, R

Primary reference

Structural studies on chimeric Sesbania mosaic virus coat protein: Revisiting SeMV assembly., Gulati A, Murthy A, Abraham A, Mohan K, Natraj U, Savithri HS, Murthy MR, Virology. 2015 Dec 17;489:34-43. doi: 10.1016/j.virol.2015.11.029. PMID:26704627

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1740 Kb) [Save to disk]

Biological Unit Coordinates (4y5z.pdb1.gz) 1709 Kb

LPC: Ligand-Protein Contacts for 4Y5Z

CSU: Contacts of Structural Units for 4Y5Z

Structure Factors (9094 Kb)

Retrieve 4Y5Z in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 4Y5Z from S2C, [Save to disk]

Re-refined 4y5z structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4Y5Z in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4y5z] [4y5z_0] [4y5z_1] [4y5z_2] [4y5z_3] [4y5z_4] [4y5z_5] [4y5z_6] [4y5z_7] [4y5z_A] [4y5z_B] [4y5z_C] [4y5z_D] [4y5z_E] [4y5z_F] [4y5z_G] [4y5z_H] [4y5z_I] [4y5z_J] [4y5z_K] [4y5z_L] [4y5z_M] [4y5z_N] [4y5z_O] [4y5z_P] [4y5z_Q] [4y5z_R] [4y5z_S] [4y5z_T] [4y5z_U] [4y5z_V] [4y5z_W] [4y5z_X] [4y5z_Y] [4y5z_Z] [4y5z_a] [4y5z_b] [4y5z_c] [4y5z_d] [4y5z_e] [4y5z_f] [4y5z_g] [4y5z_h] [4y5z_i] [4y5z_j] [4y5z_k] [4y5z_l] [4y5z_m] [4y5z_n] [4y5z_o] [4y5z_p] [4y5z_q] [4y5z_r] [4y5z_s] [4y5z_t] [4y5z_u] [4y5z_v] [4y5z_w] [4y5z_x] [4y5z_y] [4y5z_z]

SWISS-PROT database:

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