4Y72 Transferase date Feb 13, 2015
title Human Cdk1cyclinb1cks2 With Inhibitor
authors N.R.Brown, S.Korolchuk, M.P.Martin, W.Stanley, R.Moukhametzianov M.E.M.Noble, J.A.Endicott
compound source
Molecule: Cyclin-Dependent Kinase 1
Chain: A
Synonym: Cdk1,Cell Division Control Protein 2 Homolog,Cell Protein Kinase 1,P34 Protein Kinase;
Ec: 2.7.11.22,2.7.11.23
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cdk1, Cdc2, Cdc28a, Cdkn1, P34cdc2
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_cell_line: Sf9

Molecule: G2mitotic-Specific Cyclin-B1
Chain: B
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ccnb1, Ccnb
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_variant: Codonplus Ril
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-28 A+

Molecule: Cyclin-Dependent Kinases Regulatory Subunit 2
Chain: C
Fragment: Residues 165-433
Synonym: Cks-2
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cks2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Gst-3c
symmetry Space Group: P 21 21 21
R_factor 0.186 R_Free 0.252
crystal
cell
length a length b length c angle alpha angle beta angle gamma
65.166 68.646 166.771 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand LZ9 enzyme Transferase E.C.2.7.11.22 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A
  • virus receptor activity
  • histone kinase activity


  • B


    C


    Primary referenceCDK1 structures reveal conserved and unique features of the essential cell cycle CDK., Brown NR, Korolchuk S, Martin MP, Stanley WA, Moukhametzianov R, Noble ME, Endicott JA, Nat Commun. 2015 Apr 13;6:6769. doi: 10.1038/ncomms7769. PMID:25864384
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (231 Kb) [Save to disk]
  • Biological Unit Coordinates (4y72.pdb1.gz) 225 Kb
  • LPC: Ligand-Protein Contacts for 4Y72
  • CSU: Contacts of Structural Units for 4Y72
  • Structure Factors (280 Kb)
  • Retrieve 4Y72 in mmCIF format [Save to disk]
  • Re-refined 4y72 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4Y72 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4Y72
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 4y72 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4y72_A] [4y72] [4y72_C] [4y72_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4Y72: [CKS] [CYCLIN] [Cyclin_C] [S_TKc ] by SMART
  • Other resources with information on 4Y72
  • Community annotation for 4Y72 at PDBWiki (http://pdbwiki.org)

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