4Y7N	The Structure Insight into 5-Carboxycytosine Recognition by RNA Polymerase II during Transcription Elongation.	date
authors	Wang, L., Chong, J., Wang, D.
compound		source
symmetry		R_factor R_Free 0.2498
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution	3.30
ligand	1CC, G2P, MG, ZN	enzyme
Gene Ontology	Chain Function Process Component A RNA-directed 5'-3' RNA polym... B RNA-directed 5'-3' RNA polym... C RNA-directed 5'-3' RNA polym... E RNA-directed 5'-3' RNA polym... F RNA-directed 5'-3' RNA polym... H RNA-directed 5'-3' RNA polym... I RNA-directed 5'-3' RNA polym... J RNA-directed 5'-3' RNA polym... DNA-directed RNA polymerase ... K RNA-directed 5'-3' RNA polym... L RNA-directed 5'-3' RNA polym...
Primary reference	Molecular basis for 5-carboxycytosine recognition by RNA polymerase II elongation complex., Wang L, Zhou Y, Xu L, Xiao R, Lu X, Chen L, Chong J, Li H, He C, Fu XD, Wang D, Nature. 2015 Jun 29. doi: 10.1038/nature14482. PMID:26123024

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (600 Kb) [Save to disk] Biological Unit Coordinates (4y7n.pdb1.gz) 589 Kb LPC: Ligand-Protein Contacts for 4Y7N CSU: Contacts of Structural Units for 4Y7N Structure Factors (1530 Kb) Retrieve 4Y7N in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4Y7N from S2C, [Save to disk] Re-refined 4y7n structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4Y7N in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4Y7N

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4y7n_J] [4y7n_E] [4y7n] [4y7n_K] [4y7n_L] [4y7n_A] [4y7n_R] [4y7n_B] [4y7n_C] [4y7n_F] [4y7n_H] [4y7n_T] [4y7n_I] [4y7n_N] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 4Y7N: [RNA_pol_Rpb6] [RPOL8c] [RPOL9] [RPOLA_N] [RPOLCX] [RPOLD] [ZnF_C2C2 ] by SMART

Other resources with information on 4Y7N

Community annotation for 4Y7N at PDBWiki (http://pdbwiki.org)

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