4Y7O T6SS protein TssM C-terminal domain (869-1107) from EAEC date
authors Nguyen, V.S., Spinelli, S., Durand, E., Roussel, A., Cambillau, C.
compound source
symmetry
R_factor
R_Free 0.2244
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.24
ligand ZN enzyme
Gene AB98
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceBiogenesis and structure of a type VI secretion membrane core complex., Durand E, Nguyen VS, Zoued A, Logger L, Pehau-Arnaudet G, Aschtgen MS, Spinelli S, Desmyter A, Bardiaux B, Dujeancourt A, Roussel A, Cambillau C, Cascales E, Fronzes R, Nature. 2015 Jul 30;523(7562):555-60. doi: 10.1038/nature14667. Epub 2015 Jul 22. PMID:26200339
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (239 Kb) [Save to disk]
  • Biological Unit Coordinates (4y7o.pdb1.gz) 116 Kb
  • Biological Unit Coordinates (4y7o.pdb2.gz) 115 Kb
  • LPC: Ligand-Protein Contacts for 4Y7O
  • CSU: Contacts of Structural Units for 4Y7O
  • Structure Factors (381 Kb)
  • Retrieve 4Y7O in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4Y7O from S2C, [Save to disk]
  • Re-refined 4y7o structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4Y7O in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4Y7O
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4y7o_C] [4y7o_D] [4y7o] [4y7o_A] [4y7o_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4Y7O
  • Community annotation for 4Y7O at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science