4Y8C date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand 49D, MG, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
B, A


Primary referenceStructural Asymmetry of Phosphodiesterase-9A and a Unique Pocket for Selective Binding of a Potent Enantiomeric Inhibitor., Huang M, Shao Y, Hou J, Cui W, Liang B, Huang Y, Li Z, Wu Y, Zhu X, Liu P, Wan Y, Ke H, Luo HB, Mol Pharmacol. 2015 Nov;88(5):836-45. doi: 10.1124/mol.115.099747. Epub 2015 Aug , 27. PMID:26316540
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (115 Kb) [Save to disk]
  • Biological Unit Coordinates (4y8c.pdb1.gz) 107 Kb
  • LPC: Ligand-Protein Contacts for 4Y8C
  • CSU: Contacts of Structural Units for 4Y8C
  • Structure Factors (780 Kb)
  • Retrieve 4Y8C in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4Y8C from S2C, [Save to disk]
  • Re-refined 4y8c structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4Y8C in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4y8c] [4y8c_A] [4y8c_B]
  • SWISS-PROT database:
  • Domain found in 4Y8C: [HDc ] by SMART

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