4Y8M		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	CL, MG	enzyme
Gene Ontology	Chain Function Process Component A, O proteasome core complex, alp... C, Q E, S proteasome core complex, alp... G, U proteasome core complex, alp... I, W endopeptidase activator acti... proteasome core complex, bet... K, V, H, Y M, a proteasome core complex, bet... N, b proteasome core complex, bet... P, B proteasome core complex, alp... R, D proteasome core complex, alp... T, F proteasome core complex, alp... X, J endopeptidase activator acti... proteasome core complex, bet... Z, L
Primary reference	Systematic Analyses of Substrate Preferences of 20S Proteasomes Using Peptidic Epoxyketone Inhibitors., Huber EM, de Bruin G, Heinemeyer W, Paniagua Soriano G, Overkleeft HS, Groll M, J Am Chem Soc. 2015 Jun 11. PMID:26020686

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (2028 Kb) [Save to disk] Biological Unit Coordinates (4y8m.pdb1.gz) 2015 Kb LPC: Ligand-Protein Contacts for 4Y8M CSU: Contacts of Structural Units for 4Y8M Structure Factors (4634 Kb) Retrieve 4Y8M in mmCIF format [Save to disk] Re-refined 4y8m structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4Y8M in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4y8m] [4y8m_A] [4y8m_B] [4y8m_C] [4y8m_D] [4y8m_E] [4y8m_F] [4y8m_G] [4y8m_H] [4y8m_I] [4y8m_J] [4y8m_K] [4y8m_L] [4y8m_M] [4y8m_N] [4y8m_O] [4y8m_P] [4y8m_Q] [4y8m_R] [4y8m_S] [4y8m_T] [4y8m_U] [4y8m_V] [4y8m_W] [4y8m_X] [4y8m_Y] [4y8m_Z] [4y8m_a] [4y8m_b] SWISS-PROT database: Domain found in 4Y8M: [Proteasome_A_N ] by SMART

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