4YAY Membrane Protein date Feb 18, 2015
title Xfel Structure Of Human Angiotensin Receptor
authors H.Zhang, H.Unal, C.Gati, G.W.Han, N.A.Zatsepin, D.James, D.Wang, G. U.Weierstall, M.Messerschmidt, G.J.Williams, S.Boutet, O.M.Yefa T.A.White, W.Liu, A.Ishchenko, K.C.Tirupula, R.Desnoyer, M.C.Saw J.Coe, C.E.Cornrad, P.Fromme, R.C.Stevens, V.Katritch, S.S.Karni V.Cherezov, Gpcr Network (Gpcr)
compound source
Molecule: Soluble Cytochrome B562,Type-1 Angiotensin II Rec
Chain: A
Synonym: Cytochrome B-562,At1ar,At1br,Angiotensin II Type-1 At1;
Engineered: Yes
Mutation: Yes
Organism_scientific: Escherichia Coli, Homo Sapiens
Organism_common: Human
Organism_taxid: 562, 9606
Gene: Cybc, Agtr1, Agtr1a, Agtr1b, At2r1, At2r1b
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
Expression_system_strain: Sf9
Expression_system_cell_line: Sf9
Expression_system_atcc_number: Crl-1711
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pfastbac
symmetry Space Group: C 1 2 1
R_factor 0.228 R_Free 0.274
crystal
cell
length a length b length c angle alpha angle beta angle gamma
72.800 41.000 167.700 90.00 99.40 90.00
method X-Ray Diffractionresolution 2.90 Å
ligand ZD7 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure of the Angiotensin receptor revealed by serial femtosecond crystallography., Zhang H, Unal H, Gati C, Han GW, Liu W, Zatsepin NA, James D, Wang D, Nelson G, Weierstall U, Sawaya MR, Xu Q, Messerschmidt M, Williams GJ, Boutet S, Yefanov OM, White TA, Wang C, Ishchenko A, Tirupula KC, Desnoyer R, Coe J, Conrad CE, Fromme P, Stevens RC, Katritch V, Karnik SS, Cherezov V, Cell. 2015 May 7;161(4):833-44. doi: 10.1016/j.cell.2015.04.011. Epub 2015 Apr, 23. PMID:25913193
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (139 Kb) [Save to disk]
  • Biological Unit Coordinates (4yay.pdb1.gz) 134 Kb
  • LPC: Ligand-Protein Contacts for 4YAY
  • CSU: Contacts of Structural Units for 4YAY
  • Structure Factors (276 Kb)
  • Retrieve 4YAY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4YAY from S2C, [Save to disk]
  • Re-refined 4yay structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4YAY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4YAY
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4YAY, from MSDmotif at EBI
  • Fold representative 4yay from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4yay] [4yay_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4YAY
  • Community annotation for 4YAY at PDBWiki (http://pdbwiki.org)

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