4YD3		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	1PE, 4AQ, ACT, DMS, GOL, PEG	enzyme
Gene Ontology	Chain Function Process Component A
Primary reference	A Small Nonrule of 3 Compatible Fragment Library Provides High Hit Rate of Endothiapepsin Crystal Structures with Various Fragment Chemotypes., Koster H, Craan T, Brass S, Herhaus C, Zentgraf M, Neumann L, Heine A, Klebe G, J Med Chem. 2011 Oct 25. PMID:21972967

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (163 Kb) [Save to disk] Biological Unit Coordinates (4yd3.pdb1.gz) 158 Kb LPC: Ligand-Protein Contacts for 4YD3 CSU: Contacts of Structural Units for 4YD3 Structure Factors (710 Kb) Retrieve 4YD3 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4YD3 from S2C, [Save to disk] Re-refined 4yd3 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4YD3 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4yd3] [4yd3_A] SWISS-PROT database:

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