4YDH The structure of human FMNL1 N-terminal domains bound to Cdc42 date
authors Kuhn, S., Anand, K., Geyer, M.
compound source
symmetry
R_factor
R_Free 0.2809
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.80
ligand GNP, MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C


D, B
  • ubiquitin protein ligase act...


    • Primary referenceThe structure of FMNL2-Cdc42 yields insights into the mechanism of lamellipodia and filopodia formation., Kuhn S, Erdmann C, Kage F, Block J, Schwenkmezger L, Steffen A, Rottner K, Geyer M, Nat Commun. 2015 May 12;6:7088. doi: 10.1038/ncomms8088. PMID:25963737
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (160 Kb) [Save to disk]
  • Biological Unit Coordinates (4ydh.pdb1.gz) 152 Kb
  • LPC: Ligand-Protein Contacts for 4YDH
  • CSU: Contacts of Structural Units for 4YDH
  • Structure Factors (132 Kb)
  • Retrieve 4YDH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4YDH from S2C, [Save to disk]
  • Re-refined 4ydh structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4YDH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4YDH
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4YDH, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ydh] [4ydh_D] [4ydh_B] [4ydh_C] [4ydh_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4YDH: [Drf_FH3] [Drf_GBD] [RHO ] by SMART
    • Other resources with information on 4YDH
  • Community annotation for 4YDH at PDBWiki (http://pdbwiki.org)

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