4YDN date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand 2WN, 4AK, 4B8 enzyme
Gene
Ontology
ChainFunctionProcessComponent
B, A
  • hormone activity


    • Primary referenceA Fluorogenic Aryl Fluorosulfate for Intraorganellar Transthyretin Imaging in Living Cells and in Caenorhabditis elegans., Baranczak A, Liu Y, Connelly S, Du WG, Greiner ER, Genereux JC, Wiseman RL, Eisele YS, Bradbury NC, Dong J, Noodleman L, Sharpless KB, Wilson IA, Encalada SE, Kelly JW, J Am Chem Soc. 2015 Jun 17;137(23):7404-14. doi: 10.1021/jacs.5b03042. Epub 2015 , Jun 8. PMID:26051248
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (93 Kb) [Save to disk]
  • Biological Unit Coordinates (4ydn.pdb1.gz) 172 Kb
  • LPC: Ligand-Protein Contacts for 4YDN
  • CSU: Contacts of Structural Units for 4YDN
  • Structure Factors (2857 Kb)
  • Retrieve 4YDN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4YDN from S2C, [Save to disk]
  • Re-refined 4ydn structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4YDN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ydn] [4ydn_A] [4ydn_B]
  • SWISS-PROT database:
  • Domain found in 4YDN: [TR_THY ] by SMART

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