4YEX HUaa-19bp date
authors Hammel, M., Reyes, F.E., Parpana, R., Tainer, J.A., Adhya, S., Amlanjyoti, D.
compound source
symmetry
R_factor
R_Free 0.2626
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.20
Gene
Ontology
ChainFunctionProcessComponent
A, C


Primary referenceHU multimerization shift controls nucleoid compaction., Hammel M, Amlanjyoti D, Reyes FE, Chen JH, Parpana R, Tang HY, Larabell CA, Tainer JA, Adhya S, Sci Adv. 2016 Jul 29;2(7):e1600650. doi: 10.1126/sciadv.1600650. eCollection 2016, Jul. PMID:27482541
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (37 Kb) [Save to disk]
  • Biological Unit Coordinates (4yex.pdb1.gz) 32 Kb
  • CSU: Contacts of Structural Units for 4YEX
  • Structure Factors (50 Kb)
  • Retrieve 4YEX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4YEX from S2C, [Save to disk]
  • Re-refined 4yex structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4YEX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4YEX
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4yex_B] [4yex_A] [4yex_C] [4yex] [4yex_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4YEX: [BHL ] by SMART
  • Other resources with information on 4YEX
  • Community annotation for 4YEX at PDBWiki (http://pdbwiki.org)

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