4YFE date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
Primary referenceMechanisms of splicing-dependent trans-synaptic adhesion by PTPdelta-IL1RAPL1/IL-1RAcP for synaptic differentiation., Yamagata A, Yoshida T, Sato Y, Goto-Ito S, Uemura T, Maeda A, Shiroshima T, Iwasawa-Okamoto S, Mori H, Mishina M, Fukai S, Nat Commun. 2015 Apr 24;6:6926. doi: 10.1038/ncomms7926. PMID:25908590
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (131 Kb) [Save to disk]
  • Biological Unit Coordinates (4yfe.pdb1.gz) 64 Kb
  • Biological Unit Coordinates (4yfe.pdb2.gz) 64 Kb
  • CSU: Contacts of Structural Units for 4YFE
  • Structure Factors (329 Kb)
  • Retrieve 4YFE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4YFE from S2C, [Save to disk]
  • Re-refined 4yfe structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4YFE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4yfe] [4yfe_A] [4yfe_B]
  • SWISS-PROT database:
  • Domain found in 4YFE: [FN3 ] by SMART

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