4YFG date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand NAG enzyme
Primary referenceMechanisms of splicing-dependent trans-synaptic adhesion by PTPdelta-IL1RAPL1/IL-1RAcP for synaptic differentiation., Yamagata A, Yoshida T, Sato Y, Goto-Ito S, Uemura T, Maeda A, Shiroshima T, Iwasawa-Okamoto S, Mori H, Mishina M, Fukai S, Nat Commun. 2015 Apr 24;6:6926. doi: 10.1038/ncomms7926. PMID:25908590
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (315 Kb) [Save to disk]
  • Biological Unit Coordinates (4yfg.pdb1.gz) 310 Kb
  • LPC: Ligand-Protein Contacts for 4YFG
  • CSU: Contacts of Structural Units for 4YFG
  • Structure Factors (204 Kb)
  • Retrieve 4YFG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4YFG from S2C, [Save to disk]
  • Re-refined 4yfg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4YFG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4yfg] [4yfg_A] [4yfg_B]
  • SWISS-PROT database:
  • Domains found in 4YFG: [FN3] [IGc2 ] by SMART

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