OCA Atlas for 4YFX

4YFX

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

4C4, MG, ZN

enzyme

Gene

ECE24377A ; ECE24377A ; ECE24377A ; ECE24377A

Gene
Ontology

Chain	Function	Process	Component
A, B, G, H
F, L	bacterial sigma factor activ...
I, C
J, D
K, E

Primary reference

X-ray Crystal Structures of Escherichia coli RNA Polymerase with Switch Region Binding Inhibitors Enable Rational Design of Squaramides with an Improved Fraction Unbound to Human Plasma Protein., Molodtsov V, Fleming PR, Eyermann CJ, Ferguson AD, Foulk MA, McKinney DC, Masse CE, Buurman ET, Murakami KS, J Med Chem. 2015 Mar 23. PMID:25798859

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (2375 Kb) [Save to disk]

Biological Unit Coordinates (4yfx.pdb1.gz) 1197 Kb

Biological Unit Coordinates (4yfx.pdb2.gz) 1173 Kb

LPC: Ligand-Protein Contacts for 4YFX

CSU: Contacts of Structural Units for 4YFX

Structure Factors (1596 Kb)

Retrieve 4YFX in mmCIF format [Save to disk]

Re-refined 4yfx structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4YFX in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4yfx] [4yfx_A] [4yfx_B] [4yfx_C] [4yfx_D] [4yfx_E] [4yfx_F] [4yfx_G] [4yfx_H] [4yfx_I] [4yfx_J] [4yfx_K] [4yfx_L]

SWISS-PROT database:

Domains found in 4YFX: [RNA_pol_Rpb6] [RPOLA_N] [RPOLD ] by SMART

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