4YHG NATIVE BACTEROIDETES-AFFILIATED GH5 CELLULASE LINKED WITH A POLYSACCHARIDE UTILIZATION LOCUS date
authors Naas, A.E., MacKenzie, A.K., Dalhus, B., Eijsink, V.G.H., Pope, P.B.
compound source
symmetry
R_factor
R_Free 0.2277
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.40
ligand BGC enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural Features of a Bacteroidetes-Affiliated Cellulase Linked with a Polysaccharide Utilization Locus., Naas AE, MacKenzie AK, Dalhus B, Eijsink VG, Pope PB, Sci Rep. 2015 Jul 2;5:11666. doi: 10.1038/srep11666. PMID:26133573
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (253 Kb) [Save to disk]
  • Biological Unit Coordinates (4yhg.pdb1.gz) 129 Kb
  • Biological Unit Coordinates (4yhg.pdb2.gz) 121 Kb
  • LPC: Ligand-Protein Contacts for 4YHG
  • CSU: Contacts of Structural Units for 4YHG
  • Structure Factors (622 Kb)
  • Retrieve 4YHG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4YHG from S2C, [Save to disk]
  • Re-refined 4yhg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4YHG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4YHG
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4yhg] [4yhg_A] [4yhg_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4YHG
  • Community annotation for 4YHG at PDBWiki (http://pdbwiki.org)

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