4YIS Crystal Structure of LAGLIDADG Meganuclease I-CpaMI Bound to Uncleaved DNA date
authors Hallinan, J.P., Kaiser, B.K., Stoddard, B.L.
compound source
symmetry
R_factor
R_Free 0.2737
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.89
ligand CA, EDO enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceIndirect DNA Sequence Recognition and Its Impact on Nuclease Cleavage Activity., Lambert AR, Hallinan JP, Shen BW, Chik JK, Bolduc JM, Kulshina N, Robins LI, Kaiser BK, Jarjour J, Havens K, Scharenberg AM, Stoddard BL, Structure. 2016 Apr 27. pii: S0969-2126(16)30035-1. doi:, 10.1016/j.str.2016.03.024. PMID:27133026
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (143 Kb) [Save to disk]
  • Biological Unit Coordinates (4yis.pdb1.gz) 71 Kb
  • Biological Unit Coordinates (4yis.pdb2.gz) 68 Kb
  • LPC: Ligand-Protein Contacts for 4YIS
  • CSU: Contacts of Structural Units for 4YIS
  • Structure Factors (832 Kb)
  • Retrieve 4YIS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4YIS from S2C, [Save to disk]
  • Re-refined 4yis structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4YIS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4YIS
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4yis_F] [4yis_D] [4yis_A] [4yis] [4yis_E] [4yis_B] [4yis_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4YIS
  • Community annotation for 4YIS at PDBWiki (http://pdbwiki.org)

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