4YK3 date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand EDO enzyme
Primary referenceThe BID Domain of Type IV Secretion Substrates Forms a Conserved Four-Helix Bundle Topped with a Hook., Stanger FV, de Beer TA, Dranow DM, Schirmer T, Phan I, Dehio C, Structure. 2017 Jan 3;25(1):203-211. doi: 10.1016/j.str.2016.10.010. Epub 2016, Nov 23. PMID:27889208
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (144 Kb) [Save to disk]
  • Biological Unit Coordinates (4yk3.pdb1.gz) 40 Kb
  • Biological Unit Coordinates (4yk3.pdb2.gz) 35 Kb
  • Biological Unit Coordinates (4yk3.pdb3.gz) 35 Kb
  • Biological Unit Coordinates (4yk3.pdb4.gz) 32 Kb
  • LPC: Ligand-Protein Contacts for 4YK3
  • CSU: Contacts of Structural Units for 4YK3
  • Structure Factors (518 Kb)
  • Retrieve 4YK3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4YK3 from S2C, [Save to disk]
  • Re-refined 4yk3 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4YK3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4yk3] [4yk3_A] [4yk3_B] [4yk3_C] [4yk3_D]
  • SWISS-PROT database:

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